PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00168.50
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C3H
Protein Properties Length: 506aa    MW: 55527.4 Da    PI: 8.3325
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00168.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.41.9e-112349127
                   --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                   ++++ C+++ rtG C++G++C+F+H+p
  Jcr4S00168.50 23 PGEPDCSYYIRTGLCRFGATCRFNHPP 49
                   5789*********************97 PP

2zf-CCCH391.4e-127094327
                   S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                   +++C+++++tGtCk+G++CkF+H++
  Jcr4S00168.50 70 QPECQYYLKTGTCKFGATCKFHHPK 94
                   799********************96 PP

3zf-CCCH36.77.2e-12118140527
                    --SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                    +C +++rtG+Ck+G++CkF+H++
  Jcr4S00168.50 118 ECAYYLRTGQCKFGSTCKFHHPQ 140
                    7********************97 PP

4zf-CCCH37.63.6e-12330356127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    +++++C+f+++tG Ck+G+ C+F+H++
  Jcr4S00168.50 330 PGQPECQFYMKTGDCKFGAVCRFHHPR 356
                    5789*********************96 PP

5zf-CCCH36.11.1e-11414439227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                    +++lC f++r+G Ck+G++Ck+ H++
  Jcr4S00168.50 414 GEPLCIFYSRYGVCKFGPSCKYDHPM 439
                    579*********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.5872250IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-52249IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-82449IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-52750IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-42848IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.146795IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-66794IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-107094IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-67196IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-47393IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.225113141IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-5113140IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-6115141IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9118140IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-4119139IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596329357IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6329356IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8331356IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-5333359IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-5335357IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5412439IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.061412440IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-9414439IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5415439IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MQCGQMNLRS GEPMESGPYP ERPGEPDCSY YIRTGLCRFG ATCRFNHPPN RKLAIAAARM  60
KGEFPERIGQ PECQYYLKTG TCKFGATCKF HHPKDKAGIA GRVSLNIMGY PLRPNEIECA  120
YYLRTGQCKF GSTCKFHHPQ PTNVMVPLRG SPVYPNVQSP TTPGQQSYAG GLTNWSRASF  180
MTSPRWQAPS SYTPLILPQG VVSVPGWNAY SVFVVWCCWF DVVDVFVETL GKTTEPKIAI  240
RMCQLGEFAF LLELNAGYLE MILSTCKGQL GSVSSPEGQQ QTGNGQIYGT SRQSESLNTG  300
SQGALSPYRS GSVPVGFYAL QTENAFPERP GQPECQFYMK TGDCKFGAVC RFHHPRERLI  360
PAPDCVLSPI GLPLRPVATL SEVVASLCRV SPYLLKNNND KLSYPLCQEG MKLGEPLCIF  420
YSRYGVCKFG PSCKYDHPMG IFTYNLSASS STDTPVRRLL GSSSASAALT LSPEGLVEAG  480
STKPRRLSLS EPRQMPSGDD NIDTEG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012088761.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A067JKG80.0A0A067JKG8_JATCU; Uncharacterized protein
STRINGVIT_04s0023g00370.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53213355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-103zinc finger protein 1